Do smallholder farmer-led seed systems have the capacity to supply good-quality, fungal-free sorghum seed?
Agriculture & Food Security volume 6, Article number: 52 (2017)
Local seed systems that are developed, managed and maintained by farmers are a fundamental practice in smallholder crop production, supporting more than 80% of farmers in sub-Saharan Africa and feeding more than 70% of its population. The resilience of such systems is under threat from poverty, climate change, drought, increased pests and diseases, over-promotion of modern crop varieties, change of lifestyles and restrictive seed policies. The system continues to be maligned as having inferior quality, yet few studies support this assertion. This study aims to fill this research gap by evaluating 60 sorghum seed samples collected from smallholder farmers in Uzumba-Maramba-Pfungwe and Chimanimani districts of Zimbabwe. We investigated the effect of farmer-led seed management practices (e.g. seed acquisition and seed storage practices) on farm-derived sorghum seed quality (moisture, germination and fungal incidences). We found farmers using diverse seed sources and seed storage practices. Seeds were typically of good quality in that their storage moisture content was low, their germination was high, and fungal incidences were low. Seed sourced from local markets, non-governmental organizations and other farmers had germination and moisture standards that met the sorghum certification standards in Zimbabwe. However, few samples obtained from the relatives and government failed to meet the germination and/or moisture certification standards. We detected low incidences of fungi (Aspergillus flavus, Aspergillus niger, Curvularia lunata, Fusarium sp. and Penicillium sp.) in sorghum seed samples tested and in particular Fusarium sp., which is the most economic important fungus in sorghum production. We conclude that farmer-led seed systems have the capacity to supply seeds of good quality and recommend that such systems should be recognized and promoted to meet the ever-evolving needs of smallholder farmers in sub-Saharan Africa.
There is a wide recognition that the global balance for food production and environmental sustainability is tipping , with future food and nutritional security threatened by the unsustainable intensification and expansion of industrial agriculture [2,3,4]. Increased attention is being given to alternative ways of crop production, based on traditional smallholder farming systems such as agro-ecologyFootnote 1 that promote biodiversity, reduce reliance on external chemical inputs and sustain year-round yields . The International Assessment of Agricultural Knowledge, Science and Technology for Development (IAASTD) for example has called for redesigning of the Global Food System in support of small-scale agro-ecological systems , whilst World Bank and the International Panel of Experts on Sustainable Food Systems (IPES) has noted smallholder farming to be the main pathway to enhancing productivity, profitability, environmental sustainability and poverty reduction in Africa [5, 6].
Several scholars (e.g. [7, 8]) corroborate that smallholder farming systems in Africa have the potential to sustainably provide livelihoods, food and nutritional security to most of the continent’s population. Yet the success of smallholder agriculture is largely determined by the viability and resilience of local seed systems. Such systems are estimated to account for 60–100% of seed materials planted by smallholder farmers in Africa [9,10,11] and are envisaged to remain the dominant seed source in Africa in the foreseeable future [11, 12].
Seed is the basic unit of crop production , and its quality is a primary determinant of yield and nutrition . Yet seed is not only a vehicle for promoting productivity, nutrition and resilience, but also an entry point for achieving multiple development goals . The practices that farmers use to produce, procure, save, exchange and sell seed define what we refer to as farmer-led seed systems, sometimes described in the literature as informal, traditional , local  or farmer-led or managed [16, 17]. Although such seed systems continue to be maligned as having inferior quality, few studies support this assertion. By evaluating 60 sorghum samples collected from farmers in the Uzumba-Maramba-Pfungwe (UMP) and Chimanimani districts of Zimbabwe, this study aims to fill this research gap by investigating how different seed sources and storage practices influence seed quality (storage moisture content, germination quality and fungal incidence levels).
Sorghum is the fifth most important cereal crop in the world after rice, wheat, corn and barley and the second most important crop (after maize) in sub-Saharan Africa . It is also the main cereal food for over 750 million people living in semi-arid tropical regions of Africa, Asia and Latin America . Sorghum is drought tolerant and has high and stable water use efficiency, tolerating temporal waterlogging and heat, whilst endowed with high germplasm variability and nutrition . The crop is recommended for special diets such as for diabetics and infants since it is rich in essential minerals. It is also used as a livestock feed, for industrial manufacture of ethanol, traditional brewing, house thatching and fencing . For these reasons, we focus on sorghum seed as an entry crop to evaluate the resilienceFootnote 2 of farmer-led seed systems in smallholder farming communities of Zimbabwe.
Current levels of poverty in sub-Saharan Africa, coupled with the adverse effects of climate change and the high cost of agricultural inputs, suggest that crop farming in smallholder farming communities is likely constructed around farmer-led seed systems . Such systems are often criticized because seeds in their circulation are not tested for quality . In contrast, the formal seed system is not always compatible with the diverse seed requirements for smallholder farming systems . Farmer-led seed systems have proved to be resilient, as the systems continue to function without support from known quality assurance institutions [11, 24].
Pests and diseases, poor harvesting, handling and storage are however major challenges to seed quality. The study thus investigated fungal infections, germination and moisture qualities as key determinants of seed quality. Fungal infections cause seed moulding, a condition caused by parasitic and/or saprophytic interactions of numerous fungal species. Moulding reduces yield and affects seed viability, kernel weight and nutritional quality in sorghum [25, 26]. Although we screened five different fungal species, Fusarium sp. are the most economically important fungi in sorghum , causing diseases such as damping off, seed rot, head blight, root and stalk rot and seedling blight .
In addition, fungal grain infections also produce mycotoxins. These secondary toxic metabolites contaminate food and feed produced from infected sorghum. Mycotoxins have a huge impact on human and animal health. They cause many adverse health effects such as the induction of cancer and mutagenicity, as well as oestrogenic, gastrointestinal and kidney disorders, with some being immunosuppressive .
This study, which was done in Zimbabwe, provides a classic example of a country with a plethora of social, economic and ecological perturbations. The economy of Zimbabwe collapsed in the first decade of the twenty-first century, rendering its currency obsolete and crippling agricultural production . This affected seed security in the context of failing formal markets, constrained disposable household income and increased vulnerability to the effects of climate change. This backdrop of a ‘failed system’ presents a fitting environment for investigating the resilience of farmer-led seed systems in the sense of its capacity to effectively supply viable and fungal-free quality seeds. Although this context is not unique to Zimbabwe, many countries in the world can learn from this experience.
An interdisciplinary research approach was used, with data collected through a combination of qualitative and quantitative methods including household surveys, key informant interviews, participatory observations and laboratory experiments. The study was undertaken in smallholder farming communities of Uzumba-Maramba-Pfungwe (UMP) and Chimanimani districts of Zimbabwe. UMP is located in Mashonaland East Province, whilst Chimanimani is in Manicaland Province. The study districts are spatially characterized by diverse natural agro-ecological regions, and our specific study areas were situated in the natural agro-ecological region IV . This region receives low mean annual rainfall of 650–800 mm with mean annual temperature of 18–24 °C [30, 31]. These areas are highly prone to the effects of climate change, drought, poverty and food and nutritional insecurity. They have poor soils and are in general deemed unsuitable for crop production. Nonetheless, farming communities in these areas depend on rain-fed subsistence agriculture for their livelihoods.
Semi-structured household questionnaire
A household questionnaire was administered to capture from where farmers source their sorghum seeds and how they store their seeds (see Appendix 1). A total of 213 households (approximately 10% of the total households in selected wards) from both districts (96 households in UMP from Wards 4 and 5; 117 households in Chimanimani from Ward 3) participated in the survey, comprising 12 villages from UMP and 6 villages from Chimanimani. A mixture of purposive and stratification sampling procedures was used to select the wards and villages. Villages falling in natural agro-ecological zone IV and highly dependent on dry land agriculture were selected. The process of selecting wards and villages was informed through consulting farmers, extension workers and traditional leaders in the respective study communities. Table 1 presents the GPS coordinates for participating wards and villages. Systematic random sampling was done to select the participating households. Sample size was used to calculate sampling intervals per village. The first house was randomly selected, and the proceeding households were selected by skipping households within the sampling interval.
Sorghum seed sample collection
Whilst administrating the semi-structured questionnaires the study also carried out a sorghum seed collection. This took place at the onset of the 2015/2016 cropping season. A 500-g sorghum seed sample was collected from interviewed household that had sorghum seed they could share. Collected samples were modest mainly because the previous cropping season (2014/2015) was a drought season and communities were both seed and food insecure. The sample size was determined by the seed quantity required to carry out germination and seed health tests following International Seed Testing Association (ISTA) standards .
Sixty sorghum seed samples were collected from smallholder farmers in UMP (27 samples) and Chimanimani (33 samples) districts. Upon collection, samples were packed in muslin cloth bags, labelled and couriered in cardboard boxes to the National Gene Bank of Zimbabwe (NGBZ). At the NGBZ samples were stored in a cold room (Uniblock Zanotti Model MAS221N02G, Mantova, Italy) at 15 °C and 12% humidity for storage before commencing laboratory experiments.
Germination tests were done following the International Seed Testing Association (ISTA) standards  at the Department of Research and Specialist Services (DR&SS), Seed Services Institute (SSI), Harare, Zimbabwe. The SSI is mandated to regulate national formal seed certification in Zimbabwe and hosts a seed-testing laboratory, which is accredited to ISTA.
For germination tests, 50 seeds were taken at random from each sample and planted in 4 replicates on sterilized sand. A Memmert (Model SFE400-800, Schwabach, Germany) oven was used to sterilize the sand by baking it for 8 h at 220 °C. The planted seeds were placed in a germination chamber (Rootes tempair, Model CCP/1752491CSR, Kent, England) at a temperature of 23 °C; relative humidity of 50% and under constant daylight florescent lighting (Osram L36W880 SKYWHITE) for 10 days. The germination percentage was determined by the percentage ratio of normal seedlings that emerged after the 10-day incubation period and sorghum total seeds planted.
A hand-held non-destructive grain moisture metre (DRAMINSKI TwistGrain, Olsztyn Poland; accuracy- ±0.5% for normalized grain) was used to test seed storage moisture content on site. A sorghum sample was drawn from farmers’ storage facilities and filled into the instrument’s measuring screw cap (the cap carries sample volume of 90 ml). The cap was screwed tightly back on the moisture tester with assistance of a buzzer indicating the required seed compression. After the buzzer signal, we selected sorghum on the instrument measurement menu and then pressed ok to measure moisture content. Moisture content displayed on the instrument monitor was then recorded on the seed collection questionnaire. The study adopted the formal seed certification standards for sorghum (germination 80% and moisture content 12.5%) to benchmark the performance of farmer-led seed storage practices. These standards are stipulated in the seed certification schedule of the Seed Act (Chapter 19:13) of Zimbabwe.
Storage moulding fungi tests
Sixty sorghum samples (27 and 33 samples for UMP and Chimanimani, respectively) were screened for five important fungal species causing moulding and seed-borne diseases (Aspergillus flavus, Aspergillus niger, Curvularia lunata, Fusarium sp. and Penicillium sp.). Screening was done at the DR&SS, Plant Protection Research Institute (PPRI), Harare, Zimbabwe, according to ISTA 1996 seed health test standards. In order to understand the occurrence and intensity of fungal infections on sorghum seed circulating in farmer-led seed systems the study adopted the use of relative preponderance (RP) and percentage incidence (PI) indices. RP is the percentage ratio of the number of sorghum samples in which a fungus was encountered against the total number of samples tested. PI is the percentage ratio of the total number of individual seeds (per replicate) in which the fungus was encountered against the total number of seeds tested.
The blotter test  was used to screen for A. flavus, A. niger, C. lunata, Fusarium sp. and Penicillium sp. Four replicates of 20 sorghum seeds were placed manually using forceps on a well-moistened (sterilized water) absorbent filter paper, using three layers to provide enough moisture for the duration of the test. The seeds were placed in an incubator (Model WTC BINDER-970962, Tuttlingen, Germany) under near-ultraviolet light in alternating cycles of 12-h light/darkness for seven days at 22 °C. After incubation, fungi that developed on each seed were identified using a stereo microscope (Model aus Jena, German Democratic Republic) and compound microscopes (Vickers Instrument Model 750338, England).
The survey descriptive data and the analysis of variance for seed germination and seed health test were computed using STATA (StataCorp. 2015. Stata Statistical Software: Release 14. College Station, TX: StataCorp LP).
Distribution of seed storage moulding fungi on sorghum seed circulating in farmer-led seed systems
Sorghum was found to be an important crop and was grown by 76 and 74% of farmers interviewed in UMP (n = 96) and Chimanimani (n = 117) districts, respectively. We found A. flavus to be the most common species infecting sorghum seed samples (93% screened positive, n = 60) and Penicillium sp. to be the least common species (10% screened positive n = 60). A. niger recorded the highest mean percentage incidence (28%) and Penicillium sp. the least mean PI of 0.3% (Fig. 1). A. flavus was encountered in 56 samples with PI varying between 0.8 and 40%. A. niger was recorded in 52 samples, and PI ranged from 0.8 to 99.2%. C lunata screened positive in 44 samples, and PI varied between 1.6 and 33.6%. Fusarium sp. was found in 32 samples, and PI ranged from 0.8 to 10.8%. Penicillium sp. was found in 6 samples, and PI varied from 0.4 to 4.8%.
We found that more than half of the tested sorghum seed samples recorded incidence levels below 10% (Fig. 2). A. niger showed wide spread incidence levels, with the highest incidence of 99%.
Effects of different seed sources used in farmer-led seed systems on sorghum seed quality
The survey identified six different sources of sorghum seed supply used by farmers in UMP (n = 96) and Chimanimani (n = 117) districts, namely other farmers, relatives, non-governmental organizations (NGOs), government, local markets and agro-dealers (Fig. 3). The ‘other farmers’ seed source was defined as that whereby neighbouring farmers shared their seed for free with an understanding that they could benefit in times of scarcity. The ‘relatives’ category was characterized by seed exchanged between relatives as a gift upon visiting each other or for traditional purposes such as when a bride is given seed by her and her groom’s parents to start up a family. ‘Local market’ was characterized by transactions to access seed, through barter or cash. These definitions agree with the narrative of Louwaars and de Boef  on informal seed networks. The categories of ‘NGO’ and ‘government’ were mainly characterized by seed given to farmers free or on contract. Agro-dealers referred to the shops from where farmers accessed certified seed.
The highest RP was recorded in sorghum seed samples acquired through other farmers, whilst the least RP was detected in samples sourced through local market for the screened fungi (Fig. 4). The ‘other farmers’ and ‘relatives’ seed sources recorded the highest mean PI for C. lunata (5%, respectively); seed samples accessed through NGOs recorded the highest mean PI for A. flavus (16%) and A. niger (41%). Penicillium sp. was absent in all samples except for those sourced from other farmers which had RP 9% and mean PI 1%. RP for Fusarium sp. (the most important economic fungus in sorghum production) ranged from 0 to 18%, and its mean PI ranged from 0 to 10.8%.
Effects of different farmer-led seed storage facilities on sorghum seed quality
The survey found that farmers were using four different seed storage facilities, namely sacks, kitchen ceilings, plastic containers and granaries (Fig. 5). Sacks included bags made out of polythene fibre or cotton. Kitchen ceilings meant sorghum seed hung above smoking fire in traditional cooking rooms/huts. Plastic containers referred to any storage facility made up of plastics. Granaries meant traditional seed storage structures. Sacks were the most used storage facilities, whilst traditional granaries were the least used storage facilities in the study areas. We observed that vermin, which did not seem to bother the farmers who claimed that the resulting holes, helped to ventilate the seeds, pilfered most of the sacks and plastics.
Seed sourced from ‘other farmers’ recorded a RP ranging from 0 to 32% for all fungal species that were screened. Seed samples acquired through other farmers were found stored in sacks, kitchen ceilings, granaries and plastic containers. The fungal mean PI for all screened samples ranged from 4.8 to 12.8% in sacks, 0–25% in granaries, 0–15.2% in kitchen ceilings and 0.4–16.8% in plastic containers (Table 2). A. flavus recorded the least mean PI for samples stored in granaries and plastic containers, which were significantly lower (LSD, p ≤ 0.05) than the mean PI found in samples drawn from sacks and kitchen ceiling. A. niger recorded significantly higher mean PI (LSD, p ≤ 0.05) for samples stored in granaries than the mean PI for samples stored in sacks, kitchen ceilings and plastics containers. C. lunata and Fusarium sp. were absent on seed samples drawn from the granary. C. lunata mean PI was significantly lower (LSD, p ≤ 0.05) than samples coming from kitchen and plastic containers. Fusarium sp. mean PI was significantly lower (LSD, p ≤ 0.05) on samples stored in plastics than samples stored in sacks and kitchen ceilings.
Sorghum seed samples sourced from the ‘relatives’ were found stored in sacks and plastic containers only (Table 2). RP for all sorghum samples acquired from relatives ranged from 0 to 21% for all fungi screened. Mean fungal PI for all screened fungi ranged from 0 to 32.15% on samples stored in sacks and 0–17.6% on samples stored in plastic containers. The mean fungal PI was found to be significantly higher (LSD, p ≤ 0.05) for samples stored in sacks than in plastics for A. flavus and A. niger. In this category, no fungi detections were found for granary and kitchen ceiling storage facilities.
Sorghum seed sourced from government was found stored in sacks only (Table 2). The RP for all samples sourced through government ranged from 0 to 12% for all fungi screened. The mean PI for all screened fungi ranged between 0 and 16%. Seed sourced from NGOs was found stored in sacks, kitchen ceilings and granaries (Table 2). RP for all samples ranged from 0 to 15% for all fungi screened on samples sourced through NGOs. Mean PI for all screened fungi ranged from 0 to 99.2% for samples from sacks, 0–28.8% on samples from kitchen ceilings and 0–60.4% for samples from granaries.
Seed sourced from local markets tested positive for 3 fungal species out of 5 that were tested, with positive samples drawn from sacks and granaries. The overall RP ranged from 0 to 13%, and the mean PI ranged from 0 to 21.6% in sacks and 0–32% in granaries.
The results show that 75% of farmers surveyed grew sorghum, with 68% of their seed acquired through farmer-led seed sources (other farmers, relatives and local markets). The observation that farmer-based seed sources are common in smallholder communities is similar to those reported in earlier studies [5, 9, 10, 12, 23]. This confirms the importance of sorghum as an important crop and validates the fact that farmer-led seed systems remain the dominant source of seed in such communities .
Farmers used a diversity of seed sources and storage facilities, providing an inherent and resilient seed supply to the farmers. If one seed source or storage facility fails, then alternatives can be utilized. These alternatives give farmers a chance to evolve adaptive pathways that can sustain their seed security  and can thus potentially achieve food and nutritional security . The diverse seed sources from which farmers acquire their seed may enable the easy flow of climate-adapted genes from one farmers to the other , access to new landraces, the recovery of lost varieties and the renewal or broadening of the genetic base of their seed stock [17, 35]. Such practices may present smallholder farmers with broader opportunities for coping with extreme abiotic and biotic stressors under climate change [35, 36].
Local markets were found to supply seed with the highest germination rate at 93%. Only 13% of the samples tested positive for A. flavus, A. niger and C. lunata, with Fusarium sp. and Penicillium sp. completely absent. The absence of Fusarium sp., which is the most economically important fungi in sorghum production, further strengthens the importance of local markets as a trusted source of quality sorghum seed. The findings point to good seed production practices by farmers producing for local seed markets. Our results corroborate those of McGuire and Sperling  who found that 50.9% of farmers across six countries (including Zimbabwe) acquired their seed from local markets, with 55% of the transactions cash based. Farmers are rational beings cognizant of risks associated with planting poor-quality seeds; trade reported at local seed markets thus presents evidence that the source is trustworthy and reputable . The reported frequent use of local markets by farmers clearly comprises an informal certification of this seed channel.
Findings indicated that more than half of the sorghum seed samples were infected with A. flavus, A. niger, C. lunata and Fusarium sp. Though the fungal incidence levels were very low, their presence points to potential fungal damage to seed and crops, with associated negative impacts on food security, human and animal health. The study also recorded very high A. niger PI in samples originally sourced from NGOs and stored in sacks (99.2%) and granaries (60.4%). There could be a number of factors that influenced these results, including the susceptibility of screened sorghum varieties to fungal infections  and handling, transportation and storage conditions (from the origin to the beneficiary in such cases as seed aid) .
A. flavus and A. niger were the most prevalent fungi detected, and their presence indicates health threats to both humans and animals from potential mycotoxin poisoning in sorghum food and feed . Mycotoxin exposure in children causes malnutrition and stunted growth. In addition, mycotoxins in livestock cause high livestock mortality. However, most detections were of low incidence (<25%). We suggest that these results indicate both the capability of farmers and their significant management expertise to keep their seed clean.
Seed from other farmers also scored high germination (>80%), low moisture content (<11%) and low PI of fungal infections (<26%), reinforcing the finding that farmer-led seed sources have the capacity to produce seeds of high quality. The findings concur with Louwaars and de Boef  who noted that some farmers in smallholder farming community could produce seed of good quality and share with their neighbours. Alverez et al.  found smallholder farmers in Cameroon not only producing good-quality seed but also highly knowledgeable about sorghum seed production. The failure of the seed samples acquired through relatives to meet the seed certification standards could be explained by the likelihood that seed and grain are often interwoven in exchange. The chances of grain conversion to seed are even higher during crises or post-crises.
We conclude that farmers have the capacity to effectively produce and exchange amongst themselves seed of good quality that is comparable to or even higher than the standards of formal seed systems. Similar findings have also been reported for other crops, including cowpeas and maize. Biemond et al.  for example found that farmer-produced cowpeas seed samples had lower infection frequencies of seed- and soil-borne pathogens than seed-certified and foundation seed samples. In a follow-up study on maize, Biemond et al.  found that farmer-produced seed samples were heavily infected with a range of seed- and soil-borne pathogens, although control samples produced by a public institution were also heavily infected.
The RP and PI for storage facilities did not give a clear indication of which facility is better suited for storage. There is scope to do further tests with a larger sample size to analyse differences. Variations may have also resulted from the handling of seed and different seed management practices. We found sacks to be the most commonly used storage facility in both districts; these were mainly coated with polythene and had limited free air circulation, thus stimulating fungal infestation. In addition, farmers sometimes recycle the same sacks from year to year and there is a possibility of carrying over the fungal inoculum through sacks. Traditional storage facilities such as the kitchen ceilings and granaries were the least used storage facilities.
Our findings reveal unequivocally that farmer-led seed systems have the capacity to provide quality sorghum seeds for crop production in Zimbabwe. They channel seeds of reasonable quality within comparable levels to the set certification standards. Such systems not only present opportunities to deliver seed, food and nutritional security in sub-Saharan Africa but also have the potential to provide solutions that are resilient to changing climates. Farmer-led seed systems deserves greater recognition and support from governments and other relevant players in crop production in order to develop a tailored and appropriate seed system that meets the ever-evolving needs of smallholder farmers in sub-Saharan Africa.
Agro-ecology is the application of ecological concepts and principles to the design and management of sustainable food systems that are environmentally sound, highly productive and economically viable .
The capacity of a system to absorb shocks and stress, and re-organize so as to maintain and strengthen seed security over time .
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KK developed, designed, implemented, analysed and wrote this manuscript, and he is the major contributor. RW supervised all the research processes and edited the manuscript as main supervisor for KK. CM supervised all the research processes and edited the manuscript as PhD co-supervisor for KK. All authors read and approved the final manuscript.
The authors declare that they have no competing interests.
Availability of data and materials
The data sets used and/or analysed during the current study are available from the corresponding author on reasonable request.
Ethics approval and consent to participate
The research was approved by the University of Cape Town, Faculty of Science Research Ethics Committee, under the chairmanship of Dr Richard Hill (email: email@example.com). The research followed the UCT code for research involving human subjects, and the code can be accessed on http://www.uct.ac.za/downloads/uct.ac.za/about/policies/ethicscode.pdf.
We are grateful for financial and technical support to the Community Technology Development Organization, the Seed and Knowledge Initiative and Swiss Development Cooperation, and the Genetic Resources and Biotechnology Institute, which helped to host the research in Zimbabwe. This work in based on research supported by the South African Research Chairs Initiative of the Department of Science and Technology and National Research Foundation of South Africa. Any opinion, finding and conclusion or recommendation expressed in this material is that of the author(s) and the NRF does not accept any liability in this regard.
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Appendix 1: Seed collection questionnaire
Appendix 1: Seed collection questionnaire
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Kusena, K., Wynberg, R. & Mujaju, C. Do smallholder farmer-led seed systems have the capacity to supply good-quality, fungal-free sorghum seed?. Agric & Food Secur 6, 52 (2017). https://doi.org/10.1186/s40066-017-0131-7