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Effect of sorghum (Sorghum bicolor L. Moench) grain conditions on occurrence of mycotoxin-producing fungi



Sorghum is a staple cereal crop that is well adapted to arid and semi-arid lands (ASALs). It has a potential of assuring food security and livelihoods in the ASALs. The objective of this study was to determine the effect of sorghum grain conditions on occurrence of mycotoxin-producing fungi.


Two kilograms of sorghum grains were sampled from the breeder’s crop at Egerton University research field and at a farmer’s field at Kampi Ya Moto. Sorghum was sampled at dough stage and at physiological maturity. Sorghum grains sampled at dough stage were divided into three sets. Set one was immediately examined for fungi; set two was sun dried for 21 h and set three was stored for a fortnight before being examined for fungi. Grains were plated on potato dextrose agar medium and incubated at 25 ± 2 °C for 7 days. Fungal colonies growing were sub-cultured and identified using a microscope and a standard mycological catalogue based on micro- and macro-morphological features.


Identified fungi were Aspergillus, Penicillium and Fusarium species. Aflatoxins were detected in 37 samples using reverse-phased HPLC at a wavelength of 365 nm. The aflatoxin B1, B2, G1 and G2 were detected in 10.81, 5.41, 18.92 and 32.43 % of the samples, respectively. There was no aflatoxin detected on 32.42 % samples. These results would contribute to reduced risk of mycotoxin-producing fungi in sorghum grain, minimize grain losses and improve grain quality among smallholder farmers in sorghum growing areas.


Aspergillus, Fusarium and Penicillium species of fungi do occur in sorghum grain both in the field and in the store.


Sorghum grains are often contaminated by moulds. They are ideal substrates for mould growth when poorly dried and stored [1], and is a serious biotic constraint in sorghum production areas. Many of these fungi are facultative parasites or saprophytic fungi. They contribute to pre- and post-harvest deterioration of grains [2]. Grain infection occurs at the base near the pedicel interfering with grain filling and causes premature formation of black layer. This leads to development of smaller seeds resulting in reduced yields and seed dormancy [3]. At 15–19 % moisture content, spoilage fungi species grow resulting in a significant increase in respiratory activity. This results in temperature increase and sometimes spontaneous heating from colonization by succession of thermopile fungi [3]. Mould causes the grain to germinate on the panicle after black layer formation when wet conditions persist. This is due to digestion of parts of the endosperm by α-amylases [4]. Mould infections in stored grain limit the allowable storage time.

A major concern associated with grain mould is the production of mycotoxins which are harmful to both humans and animals [4]. The species associated with mycotoxin production on contaminated sorghum grains are Aspergillus sp. Fusarium sp. and Penicillium sp. [4]. Aspergillus sp. produces aflatoxins B1, B2, G1 and G2, while Fusarium sp. produces mycotoxins, fumonisins, trichothecenes and zearalenone. Penicillium sp. produces mycotoxin isofumigaclavine. Mycotoxin contamination may occur while the grain is still in the field, soon after harvesting and during storage [5]. The Food and Agriculture Organization (FAO) estimates that 25 % of the world’s food crops are affected by mycotoxin. In an attempt to harmonize the current tolerance to aflatoxin, World Health Organization (WHO) and FAO proposed maximum limits of 15 μg/kg [6]. The objective of this study was to determine mould and mycotoxin contamination of sorghum grain obtained from farmers and freshly harvested from the field.


Collection of sorghum samples during farm survey

Surveys were carried out in major sorghum growing regions in Kenya. These were Bondo and Siaya sub-counties in Siaya county, Kibwezi and Kathonzweni sub-counties in Makueni county and Rongai and Njoro sub-counties in Nakuru county. During the survey, a total of 88 samples were collected from farmers’ storage facilities. One thousand grams of each sample was placed in a sterile khaki sampling paper bags and kept at 4 °C in the laboratory until the time of analysis.

Preparation of culturing medium

The medium for fungi isolation was potato dextrose agar (PDA). The medium was prepared according to the manufacturer’s recommendations. Thirty-nine grams of PDA powder was suspended in one litre of distilled water in a conical flask. The medium was heated on a hot plate and stirred till the mixture dissolved completely. It was heated for the powder to completely dissolve. The medium was sterilized by autoclaving (model WACS-1100) at 121 °C for 15 min and then allowed to cool to about 45 °C. The cooled medium was aseptically poured into petri dishes in a laminar flow hood (model LCB-0153B-A2) and allowed to solidify.

Isolation of fungi from cultured sorghum grains

For fungal isolation, 1000 seeds of each sorghum sample were surface sterilized in 2.5 % sodium hypochlorite solution for 1 min and then rinsed twice with sterile distilled water. The grains were then placed in 70 % ethanol for 30 s and then rinsed in sterile water. From each sample, 300 grains were placed in the medium. Each sample was replicated three times. Petri dishes were placed in a completely randomized design in an incubator (model PIN30 (201) at temperature of 25 ± 2 °C for 7 days. At the end of this period, the resulting fungal colonies were individually sub-cultured onto fresh potato dextrose agar.

Identification of fungi isolated from sorghum grains

Observations on colony colour were made. Each fungal colony was examined under light microscope. Vegetative and fruiting bodies of the isolates of fungal species were identified using mycological keys and manuals [79].

Sampling from field-grown sorghum crop

Sorghum grains were sampled from breeder’s crop varieties growing in farmer’s field at Kampi Ya Moto and Egerton University research field. Five samples were collected from Egerton University, while nine samples were collected from Kampi Ya Moto (Table 1). Three plants were sampled from two inner rows in each plot at dough stage and physiological maturity. Samples were placed in sterile khaki paper bag and kept at 4 °C. Samples collected at dough stage were split into three sets as: (1) set I was subjected to immediate examination for fungi, (2) set II was sun dried for 3 days (7 h per day), then examined for fungi and (3) Set III was stored for 2 weeks then examined for fungi.

Table 1 Occurrence of fungi in sorghum grain conditions from fields at Egerton University (EU) and Kampi Ya Moto (KYM)

Detection of strains of aflatoxin using high-performance liquid chromatography (HPLC)

Based on the preliminary result on the occurrence of fungi on sorghum grains (Tables 1 and 2), a sub-sample of the 23 accessions were selected. The samples were analysed for aflatoxin using a method of Gnonlonfin et al. [10]. One hundred grams of each sample was milled and sieved using a 20-mesh sieve to obtain fine flour. Ten grams of each sample was obtained and placed in a conical flask containing 1 g of sodium chloride and 25 ml of extraction solution [methanol/water (80/20, v/v)]. The mixture was shaken at 250 rpm for 10 min using an orbital shaker (model Heidolph unimax 2010) followed by centrifugation (Model 6000 Centurion) at 4000 rpm at 5 °C for 5 min. The extract was filtered through a Whatman No. 1 filter. After filtration, 10 ml of the filtrate was diluted with 40 ml of distilled water. Thereafter, 10 ml was passed through aflatest immunoaffinity column (VICAM, Watertown) fitted on a solid phase manifold at a flow rate of 1 drop/s. The immuno affinity column was washed with 15 ml water. Aflatoxins were eluted with three millilitre methanol into a 4 ml amber vial and then stored at 4 °C until analysis. The experiment was repeated four times.

Table 2 Occurrence of fungi in sorghum grain from farmers’ storage facilities

After preparation of samples, aflatoxins were analysed using reverse-phased isocratic HPLC (model surveyor PDA detector, auto sampler plus and pressure pump) [10]. The mobile phase was water/methanol/acetonitrile (2500/550/550) at flow rate of 2.0 ml/min. Aflatoxin extract was injected at 10 µl. The fluorescence detector was set at excitation of 365 nm and emission of 440 nm. The post-column derivatization was performed using photochemical reactor for enhanced detection. The data were collected and processed using HP chem station (Darmstadt, Germany) for LC software. Determination of aflatoxin by HPLC was based on retention time in minutes as G1 (10.6 min), G2 (9.6 min), B1 (13.9 min) and B2 (12.9 min) [11].


Morphological features of fungi identified in sorghum grain conditions

Aspergillus species colonies on potato dextrose agar (PDA) were grey–green to dark green rapidly growing, densely matted, heavy rapidly growing and spreading. Morphology of conidiophores was 10–20 µm in diameter just below the apex. Phialides measured 6–10 × 3–5 µm in diameter. Conidia were typically spherical to sub-spherical, spiny, 3–6 µm in diameter and oval to pear-shaped. Colonies growing on agar were colourless to brownish (Fig. 1).

Fig. 1

Aspergillus species. a Colonies on plate upper surface. b Colonies on back of plate

Fusarium species; macro conidia and micro conidia were septate and measured 3–5 × 10–13 µm in diameter. Macro conidia were stout, distinctly septate, had a curved ventral and dorsal surface. Micro conidia were spindle shaped. Conidiophores were unbranched and branched monophialides with 240–350 µm in diameter. Colony colour was white to orange with the latter colour being common. Plate reverse was that of the upper surface (Fig. 2).

Fig. 2

Fusarium species. a Colonies on upper plate surface. b Colonies on back of plate

Penicillium species; the colony morphology was blue–green. Plate reverse was yellow. Conidiophores arose from aerial hyphae. Conidial chains were borne on phialides. Conidia were globose. Metulae were of relatively uniform length, 12–15 µm long and a terminal vesiculate of approximately 5 µm diameter. Phialides were ampulliform, 8–12 µm long. Conidia were relatively spherical, 2.0–3.0 µm in diameter borne in long, well-defined columns one per metula arranged in a characteristic whorl on each conidiophore (Fig. 3).

Fig. 3

Penicillium species. a Colonies upper plate surface. b Colonies on back of plate

Occurrences of mould fungi in sampled stored sorghum grains from farmers’ storage facilities

Results presented in Table 2 indicated that 35/88 (39.77 %) of the samples were infected with Aspergillus species, 29/88 (32.95 %), with Fusarium species and 12/88 (13.64 %) of the samples were infected with Penicillium species.

There were no fungi contaminant in 35 samples, while sorghum sample accession Si022 (Nyakotoyo) was the only sample that had been infected with Aspergillus, Fusarium and Penicillium species, the three mould fungi species.

Occurrence of mould fungi on field samples sorghum grains

The results presented in Table 1 indicate that the most predominant species was Fusarium sp. All samples except KYM03 were contaminated with Fusarium sp. (92.9 %). Aspergillus sp was isolated in five samples (35.7 %), while Penicillium sp was isolated from two samples (14.3 %) namely EU08 and KYM04. All the three fungal species were isolated from KYM04.

Aflatoxin in sorghum grains

Results presented in Table 3 indicate aflatoxin B1, B2, G1 and G2 which were detected using HPLC method. Aflatoxin B1 was detected in 10.81 % of the samples analysed. Aflatoxin B2 was detected in 5.41 %. Aflatoxin G1 was detected in 18.92 % of the samples, while aflatoxin G2 was detected in 32.42 % sorgum samples. There was no aflatoxin in 32.42 % of the samples. Three of the B1 aflatoxin and G2 were detected in farmers’ stored sorghum grains sample represented by Bon012, Bon058 and Kib073 and only in EU10 in freshly harvested grains. B2 was detected in freshly harvested sorghum grains represented by KYM04 and KYM10.

Table 3 Aflatoxin producing strains detection in sorghum grains using high-performance liquid chromatography


Three common mould fungi were isolated in sorghum grains which were collected from farmers’ stores and also from freshly harvested grains. Aspergillus species was predominant in sorghum from farmers’ stores (Table 2), while Fusarium species was predominant in freshly harvested grains (Table 1). Aspergillus species are of particular concern because of their effects on human health. Aflatoxins have both carcinogenic and hepatotoxic actions. Depending on the duration and level of exposure, dietary exposure to aflatoxins is a major risk factor for hepatocellular carcinoma, particularly in areas where hepatitis B virus infection is endemic. Ingestion of higher doses of aflatoxin can result in acute aflatoxicosis, which manifests as hepatotoxicity [12]. An outbreak of aflatoxicosis from contaminated food has been documented in Kenya, India, and Thailand [13]. In April 2004, an outbreak of hepatotoxicity was identified among people living in Kenya’s eastern and central parts. Epidemiologic investigations determined the cause of aflatoxin poisoning as ingestion of contaminated maize (corn). In that year, 317 cases were reported with 125 deaths as a result of aflatoxicosis [14]. The infestation and infection of Fusarium in cereals are of great concern worldwide as plant pathogens and producers of mycotoxins. Fusarium species occurring in cereal grains have inhibitory effects of trichothecenes on eukaryotic cells [15]. Toxins secreted by this fungus in grains have been found to be associated with disruption of normal cell function by inhibiting RNA, DNA, protein synthesis, and cell division [15, 16]. Penicilium species are of particular public health importance because they have both carcinogenic and hepatotoxic actions. It depends on the duration and level of exposure [17].

The isolation of fungal species belonging to the genera Aspergillus, Fusarium and Penicilium species was in conformity with the findings of Monica et al. [17] who reported the isolation of the same fungal species. The predominance of Aspergillus species from farmers’ storage facilities observed in this study conforms to reports elsewhere [17] and [18]. It also concurs with the findings of stored rice grains in Nigeria [7]. Aspergillus species dominates on cereals in the tropics [19]. It grows at high moisture content and more rapidly than the Fusarium and Penicillium species as these latter two will take a longer time to sporulate. Aspergillus species infection in sorghum grains is a serious problem in a crop grown under rainfed conditions. Aspergillus species infection of the crop occurs in the field before harvest [20].

The results presented in Table 2 indicated that 35/88 (39.77 %) of the samples were infected with Aspergillus species. Sorghum grains infestation by micro-organisms is a common and widespread phenomenon which has been widely reported. Aspergillus species was reported in Vigna unguiculata seeds in Ibadan, Nigeria [21] and in Saccharum officinarum seeds [22]. Storage fungi are usually not present in large quantities before harvest but are widely distributed and almost always present. Contamination occurs even with small quantities of spores in the grain as it is taken for storage after harvesting. The spores could be spread through handling, or in storage equipment or from spores already present in storage structures. Under high temperature and moisture, the small amount of inocula can increase rapidly [23].

The most predominant fungi species in field evaluated sorghum grains was Fusarium which infected 13/14 (92.85 %) samples. Fusarium species are consistently associated with infection at early grain development stages across the agro-ecological zones [24]. The fungus is a natural contaminant in cereals and other agricultural commodities [25]. This makes Fusarium species an economically important genus of fungi as it causes diseases on a wide variety of plants at different developmental stages and also in plant products [26]. A widespread distribution of Fusarium species is attributed to the ability of the fungi to grow on a wide range of substrates and their efficient mechanism of spore dispersal [27]. The results of this study are similar to those obtained by earlier workers that show Fusarium sp as a dominant species isolated from maize and sorghum samples [28, 29]. Though maize and sorghum are the most infected by Fusarium, an oilseed has also been shown to be susceptible [30].

In this study, Penicillium species was not predominant in the sorghum grains (Tables 1, 2). This finding is similar to observations elsewhere [19] on Penicillium species dominating in temperate zones, and the fungus is known to take longer time to sporulate. Similar results on Penicillium species have been reported on stored rice in Argentina and Paraguay [31].

There were interesting observations made in Table 3 which consisted of sorghum accessions selected from the results in Tables 1 and 2. There were four categories of sorghum grains. The first category represented by Bon015 (variety Gadam) had no mould detected on cultures (Table 2) but had aflatoxin G1 (Table 3). The second category represented by the entries Bon012 (var, Andiwo), Bon026 (Ochuti) and Si019 (Nyakabala) had mould growth (Table 2) and had toxin (Table 3). The third category consisted of sorghum samples such as Kib074 (var. Gadam) with mould growth (Table 2) and no toxin was detected (Table 3). The fourth category of sorghum grains had no mould growth (Table 2) and no toxin detected as represented by entries Bon020 and Nj039 (var. Seredo). Sorghum grain with mould fungi and toxins should not be consumed by human or livestock. The Aspergillus sp was of interest as it produces aflatoxin. Four strains of aflatoxin were detected in sorghum grains using HPLC method as B1, B2, G1 and G2 (Table 3). The order of acute and chronic toxicity of the aflatoxin is B1 > G1 > B2 > G2, reflecting the role played by oxidation of the 8, 9-double bond and also the greater potency associated with the cyclopentenone ring of the B series, when compared with the six-member lactone ring of the G series [32]. Aflatoxin B1 is the most toxic of the four aflatoxins. It is considered as a group I carcinogen for humans by International Agency for Research on Cancer (IARC) [33]. Aflatoxin fungi are native to tropical, warm, arid and semi-arid regions [34]. These results are similar to a survey conducted in West Africa that revealed aflatoxin B1, B2, G1, and G2 caused by Aspergillus species contaminated peanut [35] and [36, 37] on peanut products.


It is evident that Aspergillus, Fusarium and Penicillium species of fungi were the predominant pre- and post-harvest in sorghum grains.


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Authors’ contributions

AMK: conception and design, data collection and interpretation, manuscript writing and final approval of the manuscript. EKC: data organization, critical revision and final approval of the manuscript. PFA: designing, data interpretation, critical revision and final approval of the manuscript. JOO: design, critical revision and final approval of the manuscript. All authors read and approved the final manuscript.


This work was supported by World Bank through the Kenya Agricultural Productivity and Agribusiness Project (KAPAP), and formed part of an MSc Thesis submitted to Graduate School, Egerton University by the first author.

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Correspondence to Erick K. Cheruiyot.

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Kange, A.M., Cheruiyot, E.K., Ogendo, J.O. et al. Effect of sorghum (Sorghum bicolor L. Moench) grain conditions on occurrence of mycotoxin-producing fungi. Agric & Food Secur 4, 15 (2015).

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  • Fungi
  • Mycotoxin
  • Sorghum bicolor